CRISPResso version 2.0.40
[Command used]:
CRISPResso -r1 allele_specific.fastq.gz -a CGAGAGCCGCAGCCATGAACGGCACAGAGGGCCCCAATTTTTATGTGCCCTTCTCCAACGTCACAGGCGTGGTGCGGAGCCACTTCGAGCAGCCGCAGTACTACCTGGCGGAACCATGGCAGTTCTCCATGCTGGCAGCGTACATGTTCCTGCTCATCGTGCTGGG,CGAGAGCCGCAGCCATGAACGGCACAGAGGGCCCCAATTTTTATGTGCCCTTCTCCAACGTCACAGGCGTGGTGCGGAGCCCCTTCGAGCAGCCGCAGTACTACCTGGCGGAACCATGGCAGTTCTCCATGCTGGCAGCGTACATGTTCCTGCTCATCGTGCTGGG -an P23H,WT -g GTGCGGAGCCACTTCGAGCAGC --write_cleaned_report --place_report_in_output_folder

[Execution log]:
Aligning sequences...
Processing reads; N_TOT_READS: 0 N_COMPUTED_ALN: 0 N_CACHED_ALN: 0 N_COMPUTED_NOTALN: 0 N_CACHED_NOTALN: 0
Processing reads; N_TOT_READS: 10000 N_COMPUTED_ALN: 2145 N_CACHED_ALN: 7714 N_COMPUTED_NOTALN: 73 N_CACHED_NOTALN: 68
Processing reads; N_TOT_READS: 20000 N_COMPUTED_ALN: 3561 N_CACHED_ALN: 16141 N_COMPUTED_NOTALN: 130 N_CACHED_NOTALN: 168
Finished reads; N_TOT_READS: 25000 N_COMPUTED_ALN: 4219 N_CACHED_ALN: 20407 N_COMPUTED_NOTALN: 168 N_CACHED_NOTALN: 206
Done!
Quantifying indels/substitutions...
Done!
Calculating allele frequencies...
Done!
Saving processed data...
Making Plots...
Done!
Removing Intermediate files...
Analysis Complete!