Amplicon Unmodified% Modified% Reads_in_input Reads_aligned_all_amplicons Reads_aligned Unmodified Modified Discarded Insertions Deletions Substitutions Only Insertions Only Deletions Only Substitutions Insertions and Deletions Insertions and Substitutions Deletions and Substitutions Insertions Deletions and Substitutions Reference 92.28363544 7.71636456 25000 15668 15668 14459 1209 0 5 169 1049 0 160 1037 0 3 7 2